2024 Multi-omics integrative network map of maize

Multi-omics integrative network map of maize

Author: yodt

August undefined, 2024

WebA unified mixed-model method for association mapping that accounts for multiple levels of relatedness. ... a comprehensive database adapted to the maize multi-omics era. iScience. 2024; 23 ... transcriptomics, variation, phenotype, epigenetics, metabolome, multi-omics and network, tools, download, and help. Abundant and convenient visual tools ... WebAcum 21 ore · An extended pluripotency gene regulatory network in mouse embryonic stem cells was proposed based on the integrative analysis of CRISPR/Cas9-based functional genomics screens and multi-omics data.

Integration of multi-omics technologies for crop improvement: …

Web3 iun. 2024 · Multi-omics analysis of the development and fracture resistance for maize internode Xiaqing Wang, Ruyang Zhang, Zi Shi, Ying Zhang, Xuan Sun, Yulong Ji, Yanxin Zhao, Jidong Wang, Yunxia Zhang,... Web29 dec. 2024 · Here, we constructed a maize network map that contains the genomic, transcriptomic, translatomic and proteomic networks across maize development. This … kratom hair loss recovery

Histopathology images predict multi-omics aberrations and …

Web29 mar. 2024 · Although sophisticated maize gene regulatory networks (GRNs) have been constructed for functional genomics and phenotypic dissection, a multi-omics GRN connecting the translatome and transcriptome is lacking, hampering our understanding and exploration of the maize regulatome. Results Web23 iun. 2024 · A comparative multi-omics analysis was then performed by using Y331 and Y331-ΔTE to generate RNA-seq, proteomic, and metabolomic data after inoculation with F. graminearum at different time points. The integrative analysis of multi-omics data demonstrated a regulatory network of defense response at the early stage of GSR. … Web11 apr. 2024 · Li and colleagues applied the multi-omic integration method Similarity Network Fusion (SNF) across up to 9 overlapping omics data types in a cohort of 52 female never-smokers, current smokers with normal spirometry, and current smokers with mild-to-moderate COPD . In their study, Li et al. described improving subgroup classification … maplecrest apartments three rivers mi

Jianbing YAN Professor PhD Huazhong Agricultural …

A multi-omics integrative network map of maize - PubMed

Web3 iun. 2024 · High-throughput sequencing generated 21.82–25.69 GB raw reads per sample, 94.4% reached a quality score of Q30, which were mapped to the maize genome … Web16 iul. 2024 · Tutorial 4: A practical introduction to multi-omics integration and network analysis. This tutorial is a shorter version of the workshop in Omics Integration and … maple crest apartments williston park nyWebA multi-omics integrative network map of maize. Article. Full-text available. Dec 2024; ... We propose an integrative multi-trait breeding strategy via machine learning algorithm, … maple crest apts east rockaway ny

"Web20 mai 2024 · As a sink organ for starch, protein, oil, and essential nutrients, the maize (Zea mays) kernel is not only the main target for yield and quality improvement but also a model system for genetic and molecular biology studies.We identified many candidate genes for maize kernel quality and size quantitative trait loci (QTLs) at the genomic, transcriptomic, … " - Multi-omics integrative network map of maize

Multi-omics integrative network map of maize

Investigation and development of maize fused network …

WebThe workflow of DRepMel: an integrative multi-omics drug repurposing approach for predicting combination therapies for melanoma patients using two independent melanoma patient cohorts (with matching Whole Exome Sequence (WES) and RNA-seq datasets from the same patients: the TCGA (N = 459) and Moffitt Melanoma cohorts (N = 135)). Web1 aug. 2024 · Multi-omics analysis and multi-omics information network. Using computational biology methods combined with multi-omics for selecting biomolecules of interest for maize breeding is receiving increased attention (Prioul et al., 2008). For example, in genomics and phenomics, variation analyses of one phenotype of maize is …

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Web1 aug. 2024 · Multi-omics analysis and multi-omics information network. Using computational biology methods combined with multi-omics for selecting biomolecules of … Web9 apr. 2024 · The multi-omics integrative network map illustrates the principles of how molecular networks connect different types of genes and potential pathways to map a genome-wide functional landscape in maize, which should be applicable in a wide range of species. ... A high-density genomic variation map from 744 genomes encompassing …

WebAcum 21 ore · An extended pluripotency gene regulatory network in mouse embryonic stem cells was proposed based on the integrative analysis of CRISPR/Cas9-based functional … Web6 ian. 2024 · Background Multi-omics experimental approaches are becoming common practice in biological and medical sciences underlining the need to design new integrative techniques and applications to enable the multi-scale characterization of biological systems. The integrative analysis of heterogeneous datasets generally allows to acquire …

Web26 mai 2024 · Understanding cell-type-specific gene regulatory mechanisms from genetic variants to diseases remains challenging. To address this, we developed a computational pipeline, scGRNom (single-cell Gene Regulatory Network prediction from multi-omics), to predict cell-type disease genes and regulatory networks including transcription factors … Web6 oct. 2024 · This map, containing over 9 million interactions in more than 5,000 functional modules, reveals extensive functional divergence for duplicate genes and a progressive …

WebAcum 1 zi · A Machine learning workflow for connecting whole-slide digital histopathology images with multi-omics biomarkers and survival outcomes. The MOMA platform …

WebTo enable network reconstructions, we built a large-scale gene expression atlas composed of 62,547 messenger RNAs (mRNAs), 17,862 nonmodified proteins, and 6227 … kratom grow information temperaturesWebHere, we generate a first-generation multi-omics integrative network map of maize, which contains over 15 million edges for more than 1000 functional modules, covering the whole genetic transmission from genome, to … maple crest apt fort myers flWebRecently, a collaborative team led by Lin Li, Fang Yang and Jianbing Yan from Huazhong Agricultural University constructed the first multi-omics integrative network map of maize. This map comprises over 30 000 genes and 2.8 million network edges at the levels of genome, transcriptome, translatome, and proteome, finally forming 1 412 regulatory ... kratom green malay effectsWebAcum 1 zi · A Machine learning workflow for connecting whole-slide digital histopathology images with multi-omics biomarkers and survival outcomes. The MOMA platform processes the image patches from whole ... kratom hair loss and side effectsWeb24 sept. 2024 · Maize is one of the major crops in the world; however, diseases caused by various pathogens seriously affect its yield and quality. The maize Rp1-D21 mutant (mt) caused by the intragenic recombination between two nucleotide-binding, leucine-rich repeat (NLR) proteins, exhibits autoactive hypersensitive response (HR). In this study, we … maple crest apts ashevilleWebA multi-omics integrative network map of maize (Zea mays L.). Nature Genetics, 2024, 55, 144–153. l Zijun Qin, Weifu Li *, Zi Wang, Junlong Pan, Zexin Wang, Zihang Li, Guowei Wang, Jun Pan, Feng Liu,** Lan Huang, Liming Tan, Lina Z hang, Hua Han, Hong Chen, Liang Jiang. High-throughput characterization methods for Ni-based superalloys and ... maple crest butcher shopWeb6 feb. 2024 · A study in maize constructed a regulatory network of TFs using ChIP-seq data (Tu et al., 2024). ... The increasing amounts of multi-omics data provide great resources for understanding genome-wide GRNs, but they also pose challenges for the construction of integrative networks. ... The integrative network containing genome-wide regulation ... maple crest apartments valley stream